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18 #ifndef __DUDLEY_ELEMENTFILE_H__
19 #define __DUDLEY_ELEMENTFILE_H__
28 struct ElementFile_Jacobians
98 bool reducedOrder)
const;
183 #endif // __DUDLEY_ELEMENTFILE_H__
double * DSDX
Definition: dudley/src/ElementFile.h:77
int numShapes
number of shape functions
Definition: dudley/src/ElementFile.h:68
int numShapes
number of shape functions
Definition: dudley/src/ElementFile.h:173
int getNumDataPointsPerSample() const
Return the number of data points per sample.
Definition: Data.h:544
bool isComplex() const
True if components of this data are stored as complex.
Definition: Data.cpp:1160
std::vector< IndexPair > ValueAndIndexList
Definition: finley/src/Util.h:59
int * Tag
Tag[i] is the tag of element i.
Definition: dudley/src/ElementFile.h:135
index_t minColor
minimum color value
Definition: finley/src/ElementFile.h:167
void copyTable(index_t offset, index_t nodeOffset, index_t idOffset, const ElementFile *in)
Definition: dudley/src/ElementFile.cpp:108
Definition: dudley/src/ElementFile.h:42
double real_t
type of all real-valued scalars in escript
Definition: DataTypes.h:79
void gather(const index_t *index, const ElementFile *in)
Definition: finley/src/ElementFile.cpp:139
Definition: DudleyException.h:39
ElementFile_Jacobians * jacobians_reducedQ
Definition: dudley/src/ElementFile.h:181
void gather(const index_t *index, const ElementFile *in)
Definition: dudley/src/ElementFile.cpp:148
void createColoring(dim_t numNodes, const index_t *degreeOfFreedom)
Definition: ElementFile_createColoring.cpp:39
std::pair< index_t, index_t > getNodeRange() const
Definition: dudley/src/ElementFile.h:184
Definition: dudley/src/NodeFile.h:39
void allocTable(dim_t NE)
allocates the element table within an element file to hold NE elements
Definition: finley/src/ElementFile.cpp:79
@ Nodes
Definition: Dudley.h:67
#define INDEX2(_X1_, _X2_, _N1_)
Definition: index.h:23
void swapTable(ElementFile *other)
Definition: dudley/src/ElementFile.cpp:165
boost::shared_ptr< const ReferenceElementSet > const_ReferenceElementSet_ptr
Definition: ReferenceElementSets.h:94
const DataTypes::real_t * getSampleDataRO(DataTypes::RealVectorType::size_type sampleNo, DataTypes::real_t dummy=0) const
Return the sample data for the given sample no. Please do not use this unless you NEED to access samp...
Definition: Data.h:1989
IndexPair getMinMaxInt(int dim, dim_t N, const index_t *values)
Definition: dudley/src/Util.cpp:187
int * Tag
Tag[i] is the tag of element i.
Definition: finley/src/ElementFile.h:143
index_t * Nodes
Nodes[INDEX(k, i, numNodes)] is the k-th node in the i-th element.
Definition: dudley/src/ElementFile.h:147
void freeTable()
deallocates the element table within an element file
Definition: dudley/src/ElementFile.cpp:95
Definition: finley/src/ElementFile.h:42
void allocTable(dim_t NE)
allocates the element table within an element file to hold NE elements
Definition: dudley/src/ElementFile.cpp:68
int numQuad
number of quadrature nodes used to calculate jacobians
Definition: dudley/src/ElementFile.h:66
boost::shared_ptr< const ReferenceElement > const_ReferenceElement_ptr
Definition: ReferenceElements.h:214
int * Owner
Owner[i] contains the rank that owns element i.
Definition: dudley/src/ElementFile.h:138
void markNodes(std::vector< short > &mask, index_t offset) const
Definition: dudley/src/ElementFile.cpp:242
int getDataPointSize() const
Return the size of the data point. It is the product of the data point shape dimensions.
Definition: Data.cpp:1360
double * absD
used to compute volume
Definition: dudley/src/ElementFile.h:72
ElementFile_Jacobians * jacobians
jacobians of the shape function used for solution approximation
Definition: dudley/src/ElementFile.h:177
index_t * Nodes
Definition: finley/src/ElementFile.h:158
const char * ename
name of element type
Definition: dudley/src/ElementFile.h:170
void distributeByRankOfDOF(const int *mpiRankOfDOF, const index_t *nodesId)
redistributes the elements including overlap by rank
Definition: ElementFile_distributeByRankOfDOF.cpp:38
index_t maxColor
maximum color value
Definition: finley/src/ElementFile.h:170
int status
status of mesh when jacobians were updated last time
Definition: dudley/src/ElementFile.h:62
#define MPI_INT
Definition: EsysMPI.h:46
ElementFile(const_ReferenceElementSet_ptr refElementSet, escript::JMPI mpiInfo)
Definition: finley/src/ElementFile.cpp:43
index_t maxColor
maximum color value
Definition: dudley/src/ElementFile.h:158
int getNumSamples() const
Return the number of samples.
Definition: Data.h:533
index_t minColor
minimum color value
Definition: dudley/src/ElementFile.h:155
dim_t numElements
number of elements
Definition: finley/src/ElementFile.h:136
static const int localDims[8]
Definition: ShapeTable.h:67
A suite of factory methods for creating 2D and 3D dudley domains.
Definition: dudley/src/Assemble.h:32
int * Owner
Owner[i] contains the rank that owns element i.
Definition: finley/src/ElementFile.h:146
Data represents a collection of datapoints.
Definition: Data.h:64
index_t dim_t
Definition: DataTypes.h:93
dim_t numElements
number of elements
Definition: dudley/src/ElementFile.h:127
boost::shared_ptr< JMPI_ > JMPI
Definition: EsysMPI.h:72
Definition: dudley/src/ElementFile.h:66
bool hasReducedIntegrationOrder(const escript::Data &in)
Definition: Dudley.h:75
index_t * Id
Definition: dudley/src/ElementFile.h:132
index_t * Color
Definition: finley/src/ElementFile.h:164
void swap(index_t *r, index_t *c, double *v, int left, int right)
Definition: SparseMatrix.cpp:71
std::vector< IndexPair > ValueAndIndexList
Definition: dudley/src/Util.h:59
void print(const index_t *nodesId) const
prints information about this element file to stdout
Definition: dudley/src/ElementFile.cpp:131
index_t * Id
Definition: finley/src/ElementFile.h:140
int numDim
number of spatial dimensions of the domain
Definition: dudley/src/ElementFile.h:161
escript::JMPI MPIInfo
Definition: dudley/src/ElementFile.h:124
static const int Dims[8]
Definition: ShapeTable.h:68
bool numSamplesEqual(int numDataPointsPerSample, int numSamples) const
Returns true if the number of data points per sample and the number of samples match the respective a...
Definition: Data.h:555
void optimizeOrdering()
reorders the elements so that they are stored close to the nodes
Definition: dudley/src/ElementFile.cpp:178
int numDim
number of spatial dimensions
Definition: dudley/src/ElementFile.h:64
void updateTagList()
Definition: dudley/src/ElementFile.h:189
void sortValueAndIndex(ValueAndIndexList &array)
orders a ValueAndIndexList by value.
Definition: dudley/src/Util.cpp:67
void setValuesInUse(const int *values, dim_t numValues, std::vector< int > &valuesInUse, escript::JMPI mpiinfo)
Definition: dudley/src/Util.cpp:252
ElementFile(ElementTypeId etype, escript::JMPI mpiInfo)
Definition: dudley/src/ElementFile.cpp:39
void relabelNodes(const index_t *newNode, index_t offset)
Definition: dudley/src/ElementFile.cpp:252
int numLocalDim
dimension of the element e.g. 2 for a line in 2D or 3D
Definition: dudley/src/ElementFile.h:164
int index_t
type for array/matrix indices used both globally and on each rank
Definition: DataTypes.h:88
@ Nodes
Definition: Finley.h:82
dim_t numElements
number of elements
Definition: dudley/src/ElementFile.h:70
double quadweight
used to compute volume
Definition: dudley/src/ElementFile.h:74
std::vector< int > tagsInUse
array of tags which are actually used
Definition: finley/src/ElementFile.h:149
Definition: finley/src/ElementFile.h:76
ElementFile_Jacobians()
Definition: dudley/src/ElementFile_jacobians.cpp:38
index_t * Color
Definition: dudley/src/ElementFile.h:152
const char * getElementName(ElementTypeId id)
Definition: ShapeTable.cpp:118
bool actsExpanded() const
Return true if this Data is expanded or resolves to expanded. That is, if it has a separate value for...
Definition: Data.cpp:1118
void gather(int len, const index_t *index, int numData, const double *in, double *out)
Definition: dudley/src/Util.cpp:72
void setTags(int newTag, const escript::Data &mask)
sets element tags to newTag where mask > 0
Definition: dudley/src/ElementFile.cpp:207
A suite of factory methods for creating various finley domains.
Definition: finley/src/Assemble.h:32
#define ESYS_ASSERT(a, b)
EsysAssert is a MACRO that will throw an exception if the boolean condition specified is false.
Definition: Assert.h:79
std::vector< int > tagsInUse
array of tags which are actually used
Definition: dudley/src/ElementFile.h:141
An exception class that signals an invalid argument value.
Definition: EsysException.h:103
ElementTypeId
Definition: ElementType.h:39
ElementTypeId etype
element type ID
Definition: dudley/src/ElementFile.h:167
~ElementFile_Jacobians()
Definition: dudley/src/ElementFile_jacobians.cpp:49
int numNodes
number of nodes per element
Definition: dudley/src/ElementFile.h:144
std::vector< index_t > IndexVector
Definition: DataTypes.h:91
ElementFile_Jacobians * borrowJacobians(const NodeFile *nodes, bool reducedOrder) const
Definition: dudley/src/ElementFile_jacobians.cpp:55
~ElementFile()
Definition: dudley/src/ElementFile.cpp:61
int numNodes
number of nodes per element
Definition: finley/src/ElementFile.h:152