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18 #ifndef __RIPLEY_DOMAIN_H__
19 #define __RIPLEY_DOMAIN_H__
21 #include <ripley/Ripley.h>
22 #include <ripley/AbstractAssembler.h>
23 #include <ripley/RipleyException.h>
25 #include <escript/AbstractContinuousDomain.h>
26 #include <escript/Data.h>
27 #include <escript/FunctionSpace.h>
28 #include <escript/SubWorld.h>
31 #include <paso/Coupler.h>
32 #include <paso/SystemMatrix.h>
35 #ifdef ESYS_HAVE_TRILINOS
36 #include <trilinoswrap/types.h>
39 #include <boost/python/list.hpp>
40 #include <boost/python/tuple.hpp>
72 std::vector<dim_t>
first;
130 virtual int getMPISize()
const {
return m_mpiInfo->size; }
136 virtual int getMPIRank()
const {
return m_mpiInfo->rank; }
142 virtual void MPIBarrier()
const {
144 MPI_Barrier(m_mpiInfo->comm);
152 virtual bool onMasterProcessor()
const {
return getMPIRank()==0; }
158 MPI_Comm getMPIComm()
const {
return m_mpiInfo->comm; }
165 virtual bool isValidFunctionSpaceType(
int fsType)
const;
171 virtual std::string functionSpaceTypeAsString(
int fsType)
const;
177 virtual int getDim()
const {
return m_numDim; }
188 return !(operator==(other));
197 virtual std::pair<int,dim_t> getDataShape(
int fsType)
const;
205 int getTagFromSampleNo(
int fsType,
dim_t sampleNo)
const;
213 virtual void setTagMap(
const std::string& name,
int tag) {
214 m_tagMap[name] = tag;
222 virtual int getTag(
const std::string& name)
const {
223 if (m_tagMap.find(name) != m_tagMap.end()) {
224 return m_tagMap.find(name)->second;
235 virtual bool isValidTagName(
const std::string& name)
const {
236 return (m_tagMap.find(name)!=m_tagMap.end());
243 virtual std::string showTagNames()
const;
264 virtual bool probeInterpolationOnDomain(
int fsType_source,
int fsType_target)
const;
273 virtual signed char preferredInterpolationOnDomain(
int fsType_source,
274 int fsType_target)
const;
283 commonFunctionSpace(
const std::vector<int>& fs,
int& resultcode)
const;
305 #ifdef ESYS_HAVE_BOOST_NUMPY
310 virtual boost::python::numpy::ndarray getNumpyX()
const;
315 virtual boost::python::numpy::ndarray getConnectivityInfo()
const;
349 virtual void setTags(
int fsType,
int newTag,
const escript::Data& mask)
const;
356 virtual bool isCellOriented(
int fsType)
const;
364 virtual StatusType getStatus()
const {
return m_status; }
370 virtual int getNumberOfTagsInUse(
int fsType)
const;
376 virtual const int* borrowListOfTagsInUse(
int fsType)
const;
382 virtual bool canTag(
int fsType)
const;
388 virtual int getApproximationOrder(
int fsType)
const {
return 1; }
394 virtual bool supportsContactElements()
const {
return false; }
400 virtual int getContinuousFunctionCode()
const {
return Nodes; }
406 virtual int getReducedContinuousFunctionCode()
const {
return ReducedNodes; }
412 virtual int getFunctionCode()
const {
return Elements; }
424 virtual int getFunctionOnBoundaryCode()
const {
return FaceElements; }
437 virtual int getFunctionOnContactZeroCode()
const {
445 virtual int getReducedFunctionOnContactZeroCode()
const {
453 virtual int getFunctionOnContactOneCode()
const {
461 virtual int getReducedFunctionOnContactOneCode()
const {
481 virtual int getDiracDeltaFunctionsCode()
const {
return Points; }
491 virtual int getSystemMatrixTypeId(
const boost::python::object& options)
const;
502 virtual int getTransportTypeId(
int solver,
int preconditioner,
int package,
503 bool symmetry)
const;
510 virtual void setToIntegrals(std::vector<real_t>& integrals,
512 virtual void setToIntegrals(std::vector<cplx_t>& integrals,
523 Assembler_ptr assembler)
const;
531 Assembler_ptr assembler)
const;
539 Assembler_ptr assembler)
const;
546 const boost::python::list& data,
547 Assembler_ptr assembler)
const;
555 Assembler_ptr assembler)
const;
559 virtual void addPDEToTransportProblem(
572 void addPDEToTransportProblemFromPython(
575 Assembler_ptr assembler)
const;
583 int column_blocksize,
599 virtual void Print_Mesh_Info(
bool full=
false)
const;
609 virtual void write(
const std::string& filename)
const = 0;
615 virtual std::string getDescription()
const = 0;
622 void dump(
const std::string& filename)
const = 0;
629 const dim_t* borrowSampleReferenceIDs(
int fsType)
const = 0;
651 std::string varname,
const ReaderParameters& params)
const = 0;
658 const ReaderParameters& params)
const = 0;
665 std::string filename,
const ReaderParameters& params)
const = 0;
671 virtual void writeBinaryGrid(
const escript::Data& in, std::string filename,
672 int byteOrder,
int dataType)
const = 0;
678 virtual bool ownSample(
int fsType,
index_t id)
const = 0;
684 virtual dim_t getNumDataPointsGlobal()
const = 0;
690 virtual const dim_t* getNumNodesPerDim()
const = 0;
696 virtual const dim_t* getNumElementsPerDim()
const = 0;
703 virtual const dim_t* getNumFacesPerBoundary()
const = 0;
709 virtual IndexVector getNodeDistribution()
const = 0;
715 virtual const int* getNumSubdivisionsPerDim()
const = 0;
721 virtual double getLocalCoordinate(
index_t index,
int dim)
const = 0;
727 virtual boost::python::tuple getGridParameters()
const = 0;
733 virtual const double *getLength()
const = 0;
739 virtual const double *getElementLength()
const = 0;
746 virtual RankVector getOwnerVector(
int fsType)
const = 0;
753 virtual bool supportsFilter(
const boost::python::tuple& t)
const;
758 virtual Assembler_ptr createAssembler(std::string type,
759 const DataMap& options)
const {
766 Assembler_ptr createAssemblerFromPython(std::string type,
767 const boost::python::list& options)
const;
775 mutable std::vector<int> m_nodeTags, m_nodeTagsInUse;
776 mutable std::vector<int> m_elementTags, m_elementTagsInUse;
777 mutable std::vector<int> m_faceTags, m_faceTagsInUse;
778 std::vector<DiracPoint> m_diracPoints;
783 template<
typename Scalar>
787 template<
typename Scalar>
791 template<
typename Scalar>
795 void updateTagsInUse(
int fsType)
const;
797 #ifdef ESYS_HAVE_PASO
798 void createPasoConnector(
const RankVector& neighbour,
814 #ifdef ESYS_HAVE_TRILINOS
815 esys_trilinos::const_TrilinosGraph_ptr createTrilinosGraph(
821 template<
typename Scalar>
824 const std::vector<Scalar>& array)
const;
826 void addPoints(
const std::vector<double>& coords,
827 const std::vector<int>& tags);
832 virtual dim_t getNumNodes()
const = 0;
835 virtual dim_t getNumElements()
const = 0;
838 virtual dim_t getNumDOF()
const = 0;
841 virtual dim_t getNumFaceElements()
const = 0;
844 virtual IndexVector getDiagonalIndices(
bool upperOnly)
const = 0;
847 virtual void assembleCoordinates(
escript::Data& arg)
const = 0;
853 virtual void assembleIntegrate(std::vector<real_t>& integrals,
const escript::Data& arg)
const = 0;
854 virtual void assembleIntegrate(std::vector<cplx_t>& integrals,
const escript::Data& arg)
const = 0;
856 #ifdef ESYS_HAVE_TRILINOS
857 virtual esys_trilinos::const_TrilinosGraph_ptr getTrilinosGraph()
const = 0;
862 virtual std::vector<IndexVector> getConnections(
bool includeShared)
const = 0;
864 #ifdef ESYS_HAVE_PASO
867 bool reducedRowOrder,
868 bool reducedColOrder)
const = 0;
874 bool reduced)
const = 0;
879 bool reduced)
const = 0;
885 template<
typename Scalar>
888 virtual dim_t getDofOfNode(
dim_t node)
const = 0;
893 #ifdef ESYS_HAVE_PASO
905 const DataMap& coefs, Assembler_ptr assembler)
const;
911 Assembler_ptr assembler)
const;
915 Assembler_ptr assembler)
const;
917 template<
typename Scalar>
918 void setToIntegralsWorker(std::vector<Scalar>& integrals,
922 virtual dim_t findNode(
const double *coords)
const = 0;
927 #endif // __RIPLEY_DOMAIN_H__
virtual void assembleCoordinates(escript::Data &arg) const =0
populates the data object 'arg' with the node coordinates
virtual dim_t getNumElements() const =0
returns the number of elements per MPI rank
SolverOptions
Definition: SolverOptions.h:94
int getNumDataPointsPerSample() const
Return the number of data points per sample.
Definition: Data.h:544
Definition: SolverOptions.h:172
@ ReducedElements
Definition: Ripley.h:72
bool isNotEmpty(const std::string target, const DataMap &mapping)
Definition: ripley/src/domainhelpers.h:54
bool isComplex() const
True if components of this data are stored as complex.
Definition: Data.cpp:1160
static dim_t N
Definition: SparseMatrix_saveHB.cpp:52
Definition: ripley/src/AbstractAssembler.h:26
escript::JMPI m_mpiInfo
Definition: ripley/src/RipleyDomain.h:787
escript::Data getSize() const
Returns the sample size (e.g. the diameter of elements, radius of particles).
Definition: FunctionSpace.cpp:295
virtual void readBinaryGrid(escript::Data &out, std::string filename, const ReaderParameters ¶ms) const =0
reads grid data from a raw binary file into a Data object
@ DECOMP_STRICT
Definition: ripley/src/RipleyDomain.h:76
virtual dim_t getNumFaceElements() const =0
returns the number of face elements on current MPI rank
double real_t
type of all real-valued scalars in escript
Definition: DataTypes.h:79
virtual signed char preferredInterpolationOnDomain(int fsType_source, int fsType_target) const
Preferred direction of interpolation. If you really need to test for a particular direction,...
Definition: ripley/src/RipleyDomain.cpp:326
virtual dim_t getDofOfNode(dim_t node) const =0
@ SMT_CUSP
Definition: ripley/src/RipleyDomain.h:66
std::map< std::string, escript::Data > DataMap
Definition: ripley/src/domainhelpers.h:39
virtual void reorderGhostZones(int ownIndex)
Reorders elements so that 'ghost' elements (i.e. those that do not belong to ownIndex) appear last.
Definition: weipa/src/RipleyDomain.cpp:216
#define REGISTER_ESCRIPT_EXCEPTION_TRANSLATORS
Definition: ExceptionTranslators.h:26
virtual void readBinaryGridFromZipped(escript::Data &out, std::string filename, const ReaderParameters ¶ms) const =0
reads grid data from a compressed raw binary file into a Data object
FunctionSpace reducedContinuousFunction(const AbstractDomain &domain)
Return a continuous with reduced order FunctionSpace (overlapped node values on reduced element order...
Definition: FunctionSpaceFactory.cpp:51
@ SMT_COMPLEX
Definition: ripley/src/RipleyDomain.h:69
void requireWrite()
Ensures data is ready for write access. This means that the data will be resolved if lazy and will be...
Definition: Data.cpp:1239
std::vector< int > m_elementTags
Definition: ripley/src/RipleyDomain.h:790
BOOST_PYTHON_MODULE(ripleycpp)
Definition: ripleycpp.cpp:492
std::vector< dim_t > first
the (global) offset into the data object to start writing into
Definition: ripley/src/RipleyDomain.h:86
virtual bool operator==(const escript::AbstractDomain &other) const
equality operator
Definition: ripley/src/RipleyDomain.cpp:95
std::vector< int > m_faceTags
Definition: ripley/src/RipleyDomain.h:791
this class holds a (distributed) stiffness matrix
Definition: SystemMatrix.h:62
virtual void removeGhostZones(int ownIndex)
Removes 'ghost' elements and nodes.
Definition: weipa/src/RipleyDomain.cpp:229
@ SO_METHOD_DIRECT
Definition: SolverOptions.h:128
virtual bool canTag(int fsType) const
checks if this domain allows tags for the specified function space type
Definition: ripley/src/RipleyDomain.cpp:725
#define MATRIX_FORMAT_CSC
Definition: Paso.h:63
std::vector< int > m_elementTagsInUse
Definition: ripley/src/RipleyDomain.h:790
virtual void setToIntegrals(std::vector< real_t > &integrals, const escript::Data &arg) const
copies the integrals of the function defined by arg into integrals. arg has to be defined on this dom...
Definition: ripley/src/RipleyDomain.cpp:653
#define INDEX2(_X1_, _X2_, _N1_)
Definition: index.h:23
RipleyException exception class.
Definition: RipleyException.h:44
@ Points
Definition: Ripley.h:75
virtual std::vector< IndexVector > getConnections(bool includeShared) const =0
returns occupied matrix column indices for all matrix rows
void multiplyData(escript::Data &out, const escript::Data &in) const
copies data in 'in' to 'out' (from reduced to non-reduced fs)
Definition: ripley/src/RipleyDomain.cpp:1250
@ DECOMP_ADD_ELEMENTS
Definition: ripley/src/RipleyDomain.h:74
std::vector< int > m_nodeTagsInUse
Definition: ripley/src/RipleyDomain.h:789
void tupleListToMap(DataMap &mapping, const bp::list &list)
Definition: ripley/src/RipleyDomain.cpp:63
std::map< std::string, int > TagMap
Definition: Ripley.h:64
#define RIPLEY_DLL_API
Definition: ripley/src/system_dep.h:21
const DataTypes::real_t * getSampleDataRO(DataTypes::RealVectorType::size_type sampleNo, DataTypes::real_t dummy=0) const
Return the sample data for the given sample no. Please do not use this unless you NEED to access samp...
Definition: Data.h:1989
virtual bool probeInterpolationAcross(int, const escript::AbstractDomain &, int) const
determines whether interpolation from source to target is possible
Definition: ripley/src/RipleyDomain.cpp:1781
virtual escript::ATP_ptr newTransportProblem(int blocksize, const escript::FunctionSpace &functionspace, int type) const
creates a transport problem
Definition: ripley/src/RipleyDomain.cpp:1071
bool initialized
Definition: VisItControl.cpp:66
@ DATATYPE_FLOAT64
Definition: ripley/src/system_dep.h:62
virtual int getNumberOfTagsInUse(int fsType) const
returns the number of tags in use for a function space type
Definition: ripley/src/RipleyDomain.cpp:817
@ DATATYPE_INT32
Definition: ripley/src/system_dep.h:60
Stores and manipulates one type of ripley mesh elements (cells, faces).
Definition: RipleyElements.h:45
SolverOptions getPackage() const
Definition: SolverOptions.cpp:472
FunctionSpace continuousFunction(const AbstractDomain &domain)
Create function space objects.
Definition: FunctionSpaceFactory.cpp:45
virtual bool onMasterProcessor() const
returns true if on MPI processor 0, else false
Definition: ripley/src/RipleyDomain.h:166
An exception class for features which are not (yet) implemented.
Definition: EsysException.h:93
@ SMT_PASO
Definition: ripley/src/RipleyDomain.h:65
@ Nodes
Definition: Ripley.h:69
RipleyElements_ptr cells
Definition: weipa/src/RipleyDomain.h:92
@ ReducedDegreesOfFreedom
Definition: Ripley.h:68
escript::Domain_ptr _multibrick(double _n0, double _n1, double _n2, const object &l0, const object &l1, const object &l2, int d0, int d1, int d2, const object &objpoints, const object &objtags, escript::SubWorld_ptr world, unsigned int multiplier)
Definition: ripleycpp.cpp:240
virtual dim_t getNumDOF() const =0
returns the number of degrees of freedom per MPI rank
@ Elements
Definition: Ripley.h:71
SystemMatrixType
Definition: ripley/src/RipleyDomain.h:64
SystemMatrix_ptr borrowMassMatrix() const
Definition: Transport.h:70
SolverOptions getSolverMethod() const
Definition: SolverOptions.cpp:409
@ WAVE_ASSEMBLER
Definition: ripley/src/RipleyDomain.h:74
virtual void addToRHSFromPython(escript::Data &rhs, const boost::python::list &data, Assembler_ptr assembler) const
a wrapper for addToRHS that allows calling from Python
Definition: ripley/src/RipleyDomain.cpp:1041
int StatusType
Definition: AbstractDomain.h:67
@ DegreesOfFreedom
Definition: Ripley.h:67
boost::shared_ptr< SystemMatrixPattern > SystemMatrixPattern_ptr
Definition: SystemMatrixPattern.h:54
@ SMT_TRILINOS
Definition: ripley/src/RipleyDomain.h:67
virtual Assembler_ptr createAssembler(std::string type, const DataMap &options) const
Definition: ripley/src/RipleyDomain.h:772
dim_t node
Definition: ripley/src/RipleyDomain.h:106
virtual void interpolateNodesOnElements(escript::Data &out, const escript::Data &in, bool reduced) const =0
interpolates data on nodes in 'in' onto (reduced) elements in 'out'
virtual int getMPIRank() const
returns the MPI rank of this processor
Definition: ripley/src/RipleyDomain.h:150
@ BYTEORDER_NATIVE
Definition: ripley/src/system_dep.h:47
virtual const int * borrowListOfTagsInUse(int fsType) const
returns a pointer to the list of tags in use for a function space type
Definition: ripley/src/RipleyDomain.cpp:837
bool commonFunctionSpace(const std::vector< int > &fs, int &resultcode) const
given a vector of FunctionSpace type codes, passes back a code which all can be interpolated to
Definition: ripley/src/RipleyDomain.cpp:193
std::vector< int > m_faceTagsInUse
Definition: ripley/src/RipleyDomain.h:791
Definition: SharedComponents.h:55
int byteOrder
byte order in the file (used by binary reader only)
Definition: ripley/src/RipleyDomain.h:95
IndexVector m_diracPointNodeIDs
Definition: ripley/src/RipleyDomain.h:793
boost::shared_ptr< AbstractDomain > Domain_ptr
Definition: AbstractDomain.h:55
std::vector< dim_t > numValues
the number of values to read from file
Definition: ripley/src/RipleyDomain.h:88
Give a short description of what AbstractTransportProblem does.
Definition: AbstractTransportProblem.h:58
A struct to contain a dirac point's information.
Definition: ripley/src/RipleyDomain.h:104
escript::Domain_ptr _rectangle(double _n0, double _n1, const object &l0, const object &l1, int d0, int d1, const object &objpoints, const object &objtags, escript::SubWorld_ptr world)
Definition: ripleycpp.cpp:410
virtual void readNcGrid(escript::Data &out, std::string filename, std::string varname, const ReaderParameters ¶ms) const =0
reads grid data from a netCDF file into a Data object
@ SO_PRECONDITIONER_ILUT
Definition: SolverOptions.h:148
@ ReducedNodes
Definition: Ripley.h:70
int getDataPointSize() const
Return the size of the data point. It is the product of the data point shape dimensions.
Definition: Data.cpp:1360
bool isComplex() const
Definition: SolverOptions.cpp:638
virtual void interpolateAcross(escript::Data &target, const escript::Data &source) const
interpolates data given on source onto target where source and target are given on different domains
Definition: ripley/src/RipleyDomain.cpp:1787
const escript::Data unpackData(const std::string target, const DataMap &mapping)
Definition: ripley/src/domainhelpers.h:43
Definition: FunctionSpace.h:49
virtual void MPIBarrier() const
if compiled for MPI then executes an MPI_Barrier, else does nothing
Definition: ripley/src/RipleyDomain.h:156
JMPI makeInfo(MPI_Comm comm, bool owncom)
Definition: EsysMPI.cpp:43
@ DEFAULT_ASSEMBLER
Definition: ripley/src/RipleyDomain.h:73
const FunctionSpace & getFunctionSpace() const
Return the function space.
Definition: Data.h:463
virtual void setToGradient(escript::Data &out, const escript::Data &in) const
copies the gradient of 'in' into 'out'. The actual function space to be considered for the gradient i...
Definition: ripley/src/RipleyDomain.cpp:602
boost::shared_ptr< DataVar > DataVar_ptr
Definition: weipa.h:65
Definition: DataVar.cpp:51
#define MATRIX_FORMAT_OFFSET1
Definition: Paso.h:65
bool probeInterpolationAcross(int fsType_source, const escript::AbstractDomain &domain, int fsType_target, int dim)
Definition: CrossDomainCoupler.cpp:32
void averageData(escript::Data &out, const escript::Data &in) const
averages data in 'in' to 'out' (from non-reduced to reduced fs)
Definition: ripley/src/RipleyDomain.cpp:1228
const_Domain_ptr getDomain() const
Returns the function space domain.
Definition: FunctionSpace.cpp:103
#define MPI_INT
Definition: EsysMPI.h:46
RipleyNodes_ptr nodes
Definition: weipa/src/RipleyDomain.h:91
virtual escript::Data getSize() const
returns the element size
Definition: ripley/src/RipleyDomain.cpp:578
Represents a full Ripley domain including nodes and elements.
Definition: weipa/src/RipleyDomain.h:50
assembler_t assembler_type
Definition: ripley/src/RipleyDomain.h:794
boost::shared_ptr< RipleyElements > RipleyElements_ptr
Definition: RipleyElements.h:33
std::string siloPath
Definition: weipa/src/RipleyDomain.h:94
std::vector< int > m_nodeTags
Definition: ripley/src/RipleyDomain.h:789
virtual bool writeToSilo(DBfile *dbfile, const std::string &pathInSilo, const StringVec &labels, const StringVec &units, bool writeMeshData)
Writes the domain to a Silo file.
Definition: weipa/src/RipleyDomain.cpp:243
@ BYTEORDER_LITTLE_ENDIAN
Definition: ripley/src/system_dep.h:55
@ DATATYPE_FLOAT32
Definition: ripley/src/system_dep.h:61
Assembler_ptr createAssemblerFromPython(std::string type, const boost::python::list &options) const
Definition: ripley/src/RipleyDomain.cpp:1033
Stores and manipulates ripley mesh nodes.
Definition: RipleyNodes.h:39
std::vector< int > RankVector
Definition: Ripley.h:63
@ ZONE_CENTERED
Definition: DomainChunk.h:33
int getNumSamples() const
Return the number of samples.
Definition: Data.h:533
escript::Data getNormal() const
Returns the surface normal field.
Definition: FunctionSpace.cpp:286
void copy(dim_t N, double *out, const double *in)
out = in
Definition: PasoUtil.h:116
Rectangle is the 2-dimensional implementation of a RipleyDomain.
Definition: ripley/src/Rectangle.h:43
virtual void addToRHS(escript::Data &rhs, const DataMap &data, Assembler_ptr assembler) const
adds a PDE onto rhs, used for custom solvers with varying arguments counts and so on
Definition: ripley/src/RipleyDomain.cpp:1049
#define MPI_COMM_WORLD
Definition: EsysMPI.h:48
Data represents a collection of datapoints.
Definition: Data.h:64
RipleyDomain extends the AbstractContinuousDomain interface for the Ripley library and is the base cl...
Definition: ripley/src/RipleyDomain.h:116
virtual dim_t getNumDataPointsGlobal() const =0
returns the number of data points summed across all MPI processes
double l2(dim_t n, const double *x, escript::JMPI mpiinfo)
returns the global L2 norm of x
Definition: PasoUtil.cpp:530
SystemMatrix_ptr borrowTransportMatrix() const
Definition: Transport.h:65
int m_numDim
Definition: ripley/src/RipleyDomain.h:785
virtual boost::python::tuple getGridParameters() const =0
returns the tuple (origin, spacing, number_of_elements)
escript::Data getX() const
Returns the spatial locations of the data points.
Definition: FunctionSpace.cpp:229
index_t dim_t
Definition: DataTypes.h:93
boost::shared_ptr< JMPI_ > JMPI
Definition: EsysMPI.h:72
SystemMatrixType type
Definition: SystemMatrix.h:324
boost::shared_ptr< AbstractTransportProblem > ATP_ptr
Definition: AbstractTransportProblem.h:175
Base class for escript system matrices.
Definition: AbstractSystemMatrix.h:57
virtual bool initFromEscript(const escript::AbstractDomain *domain)
Initialises the domain using an escript domain instance.
Definition: weipa/src/RipleyDomain.cpp:50
DataTypes::real_t * getSampleDataRW(DataTypes::RealVectorType::size_type sampleNo, DataTypes::real_t dummy=0)
Return the sample data for the given sample no. Please do not use this unless you NEED to access samp...
Definition: Data.h:1954
virtual void interpolateOnDomain(escript::Data &target, const escript::Data &source) const
interpolates data given on source onto target where source and target have to be given on the same do...
Definition: ripley/src/RipleyDomain.cpp:374
SparseMatrix_ptr mainBlock
main block
Definition: SystemMatrix.h:342
boost::shared_ptr< Coupler< T > > Coupler_ptr
Definition: Coupler.h:57
escript::Data readBinaryGridFromZipped(std::string filename, escript::FunctionSpace fs, const object &pyShape, double fill, int byteOrder, int dataType, const object &pyFirst, const object &pyNum, const object &pyMultiplier, const object &pyReverse)
Definition: ripleycpp.cpp:88
virtual bool isValidFunctionSpaceType(int fsType) const
returns true if the argument is a valid function space type for this domain
Definition: ripley/src/RipleyDomain.cpp:106
virtual StringVec getVarNames() const
Returns the names of all 'special' domain variables.
Definition: weipa/src/RipleyDomain.cpp:146
virtual escript::ASM_ptr newSystemMatrix(int row_blocksize, const escript::FunctionSpace &row_functionspace, int column_blocksize, const escript::FunctionSpace &column_functionspace, int type) const
creates a stiffness matrix and initializes it with zeros
Definition: ripley/src/RipleyDomain.cpp:943
boost::shared_ptr< ElementData > ElementData_ptr
Definition: weipa.h:67
virtual void addToSystemFromPython(escript::AbstractSystemMatrix &mat, escript::Data &rhs, const boost::python::list &data, Assembler_ptr assembler) const
a wrapper for addToSystem that allows calling from Python
Definition: ripley/src/RipleyDomain.cpp:1023
virtual bool initFromFile(const std::string &filename)
Reads the domain from a dump file.
Definition: weipa/src/RipleyDomain.cpp:71
virtual DataVar_ptr getDataVarByName(const std::string &name) const
Creates and returns a variable with domain data.
Definition: weipa/src/RipleyDomain.cpp:161
@ NODE_CENTERED
Definition: DomainChunk.h:32
virtual void assembleGradient(escript::Data &out, const escript::Data &in) const =0
computes the gradient of 'in' and puts the result in 'out'
escript::Data readBinaryGrid(std::string filename, escript::FunctionSpace fs, const object &pyShape, double fill, int byteOrder, int dataType, const object &pyFirst, const object &pyNum, const object &pyMultiplier, const object &pyReverse)
Definition: ripleycpp.cpp:63
assembler_t
Definition: ripley/src/RipleyDomain.h:58
void assemblePDEBoundary(escript::AbstractSystemMatrix *mat, escript::Data &rhs, const DataMap &coefs, Assembler_ptr assembler) const
Definition: ripley/src/RipleyDomain.cpp:1668
RipleyElements_ptr faces
Definition: weipa/src/RipleyDomain.h:93
virtual void assembleIntegrate(std::vector< real_t > &integrals, const escript::Data &arg) const =0
copies the integrals of the function defined by 'arg' into 'integrals'
std::vector< int > multiplier
Definition: ripley/src/RipleyDomain.h:91
SparseMatrix_ptr row_coupleBlock
coupling to neighbouring processors (col - row)
Definition: SystemMatrix.h:346
escript::Data readNcGrid(std::string filename, std::string varname, escript::FunctionSpace fs, const object &pyShape, double fill, const object &pyFirst, const object &pyNum, const object &pyMultiplier, const object &pyReverse)
Definition: ripleycpp.cpp:117
bool isEmpty() const
Definition: Data.cpp:1132
std::vector< real_t > DoubleVector
Definition: Ripley.h:62
int getNumDataPoints() const
Return the number of data points.
Definition: Data.h:523
dim_t col_block_size
Definition: SystemMatrix.h:331
virtual bool supportsFilter(const boost::python::tuple &t) const
returns true if this domain can handle the specified tuple of filter options.
Definition: ripley/src/RipleyDomain.cpp:1794
virtual int getDim() const
returns the number of spatial dimensions of the domain
Definition: ripley/src/RipleyDomain.h:191
@ FaceElements
Definition: Ripley.h:73
virtual int getTransportTypeId(int solver, int preconditioner, int package, bool symmetry) const
returns the identifier of the transport problem type to be used when a particular solver,...
Definition: ripley/src/RipleyDomain.cpp:932
virtual ElementData_ptr getElementsByName(const std::string &name) const
Returns element data with given name.
Definition: weipa/src/RipleyDomain.cpp:193
virtual void addToSystem(escript::AbstractSystemMatrix &mat, escript::Data &rhs, const DataMap &data, Assembler_ptr assembler) const
adds a PDE onto the stiffness matrix mat and rhs, used for custom solvers with varying arguments coun...
Definition: ripley/src/RipleyDomain.cpp:1010
virtual void setNewX(const escript::Data &arg)
assigns new location to the domain.
Definition: ripley/src/RipleyDomain.cpp:1143
boost::shared_ptr< SharedComponents > SharedComponents_ptr
Definition: SharedComponents.h:50
@ SO_PRECONDITIONER_AMG
Definition: SolverOptions.h:145
Definition: Transport.h:36
void setToIntegralsWorker(std::vector< Scalar > &integrals, const escript::Data &arg) const
Definition: ripley/src/RipleyDomain.cpp:664
virtual std::string getDescription() const =0
returns a description for this domain
static int getTypeId(int solver, int preconditioner, int package, bool symmetry, const escript::JMPI &mpi_info)
Definition: Transport.h:95
int tag
Definition: ripley/src/RipleyDomain.h:107
virtual bool isCellOriented(int fsType) const
returns true if data on this domain and given function space type has to be considered as cell center...
Definition: ripley/src/RipleyDomain.cpp:702
void assemblePDEDirac(escript::AbstractSystemMatrix *mat, escript::Data &rhs, const DataMap &coefs, Assembler_ptr assembler) const
Definition: ripley/src/RipleyDomain.cpp:1734
void updateTagsInUse(int fsType) const
Definition: ripley/src/RipleyDomain.cpp:1269
virtual ElementData_ptr getElementsForFunctionSpace(int fsCode) const
Returns the element data for given function space code.
Definition: weipa/src/RipleyDomain.cpp:97
virtual void setTagMap(const std::string &name, int tag)
sets a map from a clear tag name to a tag key
Definition: ripley/src/RipleyDomain.h:227
dim_t row_block_size
Definition: SystemMatrix.h:330
void dump(const std::string &filename) const =0
dumps the mesh to a file with the given name
@ BYTEORDER_BIG_ENDIAN
Definition: ripley/src/system_dep.h:56
bool isSymmetric() const
Definition: SolverOptions.cpp:648
const dim_t * borrowSampleReferenceIDs(int fsType) const =0
returns the array of reference numbers for a function space type
@ SMT_UNROLL
Definition: ripley/src/RipleyDomain.h:70
Structure that wraps parameters for the grid reading routines.
Definition: ripley/src/RipleyDomain.h:83
void copyData(escript::Data &out, const escript::Data &in) const
copies data in 'in' to 'out' (both must be on same function space)
Definition: ripley/src/RipleyDomain.cpp:1213
SystemMatrixPattern_ptr pattern
Definition: SystemMatrix.h:325
virtual dim_t findNode(const double *coords) const =0
finds the node that the given point coordinates belong to
virtual escript::Data getX() const
returns locations in the FEM nodes
Definition: ripley/src/RipleyDomain.cpp:556
SolverOptions getPreconditioner() const
Definition: SolverOptions.cpp:353
void assemblePDE(escript::AbstractSystemMatrix *mat, escript::Data &rhs, const DataMap &coefs, Assembler_ptr assembler) const
calls the right PDE assembly routines after performing input checks
Definition: ripley/src/RipleyDomain.cpp:1596
boost::shared_ptr< SubWorld > SubWorld_ptr
Definition: SubWorld.h:161
virtual int getSystemMatrixTypeId(const boost::python::object &options) const
returns the identifier of the matrix type to be used for the global stiffness matrix when a particula...
Definition: ripley/src/RipleyDomain.cpp:873
#define MPI_MIN
Definition: EsysMPI.h:53
bool isDirectSolver(const SolverOptions &method)
returns true if the passed solver method refers to a direct solver type
Definition: SolverOptions.h:157
Brick is the 3-dimensional implementation of a RipleyDomain.
Definition: ripley/src/Brick.h:43
void setDecompositionPolicy(int policy)
Definition: ripleycpp.cpp:140
virtual void writeBinaryGrid(const escript::Data &in, std::string filename, int byteOrder, int dataType) const =0
writes a Data object to a file in raw binary format
virtual bool isValidTagName(const std::string &name) const
returns true if name is a defined tag name
Definition: ripley/src/RipleyDomain.h:249
virtual StringVec getMeshNames() const
Returns the names of all meshes within this domain.
Definition: weipa/src/RipleyDomain.cpp:130
virtual void nodesToDOF(escript::Data &out, const escript::Data &in) const =0
converts data on nodes in 'in' to degrees of freedom in 'out'
virtual void setTags(int fsType, int newTag, const escript::Data &mask) const
assigns new tag newTag to all samples of given function space with a positive value of mask for any o...
Definition: ripley/src/RipleyDomain.cpp:748
void RuntimeErrorTranslator(const EsysException &e)
Function which translates an EsysException into a python RuntimeError.
Definition: ExceptionTranslators.cpp:51
int index_t
type for array/matrix indices used both globally and on each rank
Definition: DataTypes.h:88
std::vector< index_t > IndexVector
Definition: Ripley.h:61
Brick is the 3-dimensional implementation of a RipleyDomain.
Definition: MultiBrick.h:43
void addPDEToTransportProblemFromPython(escript::AbstractTransportProblem &tp, escript::Data &source, const boost::python::list &data, Assembler_ptr assembler) const
adds a PDE onto a transport problem
Definition: ripley/src/RipleyDomain.cpp:1096
RipleyDomain()
Definition: weipa/src/RipleyDomain.cpp:36
std::vector< int > reverse
if non-zero, values are written from last index to first index
Definition: ripley/src/RipleyDomain.h:93
virtual std::string showTagNames() const
returns all tag names in a single string separated by commas
Definition: ripley/src/RipleyDomain.cpp:182
bool initialized
Definition: weipa/src/RipleyDomain.h:90
DecompositionPolicy
Definition: ripley/src/RipleyDomain.h:73
virtual std::string functionSpaceTypeAsString(int fsType) const
returns a description for the given function space type code
Definition: ripley/src/RipleyDomain.cpp:125
bool isExpanded() const
Return true if this Data is expanded.
Definition: Data.cpp:1111
void addPoints(const std::vector< double > &coords, const std::vector< int > &tags)
Definition: ripley/src/RipleyDomain.cpp:1812
virtual void setToX(escript::Data &arg) const
copies the location of data points into arg. The domain of arg has to match this domain.
Definition: ripley/src/RipleyDomain.cpp:583
boost::shared_ptr< NodeData > NodeData_ptr
Definition: weipa.h:69
@ ReducedFaceElements
Definition: Ripley.h:74
@ SO_DEFAULT
Definition: SolverOptions.h:110
std::vector< std::string > StringVec
Definition: weipa.h:61
int getTypeCode() const
Returns the function space type code.
Definition: FunctionSpace.cpp:95
int getDim() const
Return the number of spatial dimensions of the underlying domain.
Definition: FunctionSpace.h:197
FunctionSpace function(const AbstractDomain &domain)
Return a function FunctionSpace.
Definition: FunctionSpaceFactory.cpp:57
~RipleyDomain()
Destructor.
Definition: ripley/src/RipleyDomain.cpp:90
void dofToNodes(escript::Data &out, const escript::Data &in) const
converts data on degrees of freedom in 'in' to nodes in 'out'
Definition: ripley/src/RipleyDomain.cpp:1150
Data Vector(double value, const FunctionSpace &what, bool expanded)
Return a Data object containing vector data-points. ie: rank 1 data-points.
Definition: DataFactory.cpp:139
@ LAME_ASSEMBLER
Definition: ripley/src/RipleyDomain.h:75
virtual Centering getCenteringForFunctionSpace(int fsCode) const
Returns whether data on given function space is node or cell centered.
Definition: weipa/src/RipleyDomain.cpp:77
virtual bool probeInterpolationOnDomain(int fsType_source, int fsType_target) const
returns true if data on fsType_source can be interpolated onto fsType_target, false otherwise
Definition: ripley/src/RipleyDomain.cpp:288
static dim_t M
Definition: SparseMatrix_saveHB.cpp:52
FunctionSpace functionOnBoundary(const AbstractDomain &domain)
Return a function on boundary FunctionSpace.
Definition: FunctionSpaceFactory.cpp:69
int MPI_Comm
Definition: EsysMPI.h:42
virtual NodeData_ptr getMeshForFunctionSpace(int fsCode) const
Returns the node mesh for given function space code.
Definition: weipa/src/RipleyDomain.cpp:83
boost::shared_ptr< Connector > Connector_ptr
Definition: Coupler.h:52
boost::shared_ptr< Pattern > Pattern_ptr
Definition: Pattern.h:52
virtual int getMPISize() const
returns the number of processors used for this domain
Definition: ripley/src/RipleyDomain.h:144
bool actsExpanded() const
Return true if this Data is expanded or resolves to expanded. That is, if it has a separate value for...
Definition: Data.cpp:1118
Base class for all escript domains.
Definition: AbstractDomain.h:64
int getTagFromSampleNo(int fsType, dim_t sampleNo) const
returns the tag key for the given sample number
Definition: ripley/src/RipleyDomain.cpp:787
static int getSystemMatrixTypeId(int solver, int preconditioner, int package, bool symmetry, const escript::JMPI &mpi_info)
Definition: SystemMatrix.cpp:547
@ SO_PACKAGE_TRILINOS
Definition: SolverOptions.h:119
boost::shared_ptr< AbstractSystemMatrix > ASM_ptr
Definition: AbstractSystemMatrix.h:47
@ SMT_SYMMETRIC
Definition: ripley/src/RipleyDomain.h:68
virtual std::pair< int, dim_t > getDataShape(int fsType) const
returns the number of data points per sample, and the number of samples as a pair.
Definition: ripley/src/RipleyDomain.cpp:152
virtual int getTag(const std::string &name) const
returns the tag key for tag name
Definition: ripley/src/RipleyDomain.h:236
std::vector< DiracPoint > m_diracPoints
Definition: ripley/src/RipleyDomain.h:792
Centering
Definition: DomainChunk.h:31
int getRowBlockSize() const
returns the row block size
Definition: AbstractSystemMatrix.h:128
Data Scalar(double value, const FunctionSpace &what, bool expanded)
A collection of factory functions for creating Data objects which contain data points of various shap...
Definition: DataFactory.cpp:63
int dataType
data type in the file (used by binary reader only)
Definition: ripley/src/RipleyDomain.h:97
int getColumnBlockSize() const
returns the column block size
Definition: AbstractSystemMatrix.h:139
std::vector< int > IntVec
Definition: weipa.h:60
TagMap m_tagMap
Definition: ripley/src/RipleyDomain.h:788
Definition: RipleySystemMatrix.h:39
Rectangle is the 2-dimensional implementation of a RipleyDomain.
Definition: MultiRectangle.h:43
virtual NodeData_ptr getMeshByName(const std::string &name) const
Returns the node mesh with given name.
Definition: weipa/src/RipleyDomain.cpp:204
An exception class that signals an invalid argument value.
Definition: EsysException.h:103
A class that provides functionality to read an escript data object from a dump file or an escript::Da...
Definition: DataVar.h:36
AbstractContinuousDomain, base class for continuous domains.
Definition: AbstractContinuousDomain.h:60
escript::Domain_ptr _multirectangle(double _n0, double _n1, const object &l0, const object &l1, int d0, int d1, const object &objpoints, const object &objtags, escript::SubWorld_ptr world, unsigned int multiplier)
Definition: ripleycpp.cpp:331
virtual escript::Data getNormal() const
returns boundary normals at the quadrature point on the face elements
Definition: ripley/src/RipleyDomain.cpp:573
#define MATRIX_FORMAT_DEFAULT
Definition: Paso.h:62
virtual void Print_Mesh_Info(bool full=false) const
writes information about the mesh to standard output
Definition: ripley/src/RipleyDomain.cpp:857
escript::Domain_ptr _brick(double _n0, double _n1, double _n2, const object &l0, const object &l1, const object &l2, int d0, int d1, int d2, const object &objpoints, const object &objtags, escript::SubWorld_ptr world)
Definition: ripleycpp.cpp:151
virtual NodeData_ptr getNodes() const
Returns a pointer to the full nodes.
Definition: weipa/src/RipleyDomain.h:85
virtual dim_t getNumNodes() const =0
returns the number of nodes per MPI rank
@ DECOMP_EXPAND
Definition: ripley/src/RipleyDomain.h:75
boost::shared_ptr< RipleyNodes > RipleyNodes_ptr
Definition: RipleyNodes.h:31
virtual void interpolateNodesOnFaces(escript::Data &out, const escript::Data &in, bool reduced) const =0
interpolates data on nodes in 'in' onto (reduced) face elements in 'out'
void add(const IndexVector &rowIndex, const std::vector< double > &array)
std::vector< T > extractPyArray(const object &obj, const std::string &name, int expectedLength=0)
Definition: ripleycpp.cpp:38
virtual void addPDEToTransportProblem(escript::AbstractTransportProblem &tp, escript::Data &source, const DataMap &data, Assembler_ptr assembler) const
adds a PDE onto a transport problem
Definition: ripley/src/RipleyDomain.cpp:1105
SparseMatrix_ptr col_coupleBlock
coupling to neighbouring processors (row - col)
Definition: SystemMatrix.h:344
void addToSystemMatrix(escript::AbstractSystemMatrix *mat, const IndexVector &nodes, dim_t numEq, const std::vector< Scalar > &array) const