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18 #ifndef __Speckley_DOMAIN_H__
19 #define __Speckley_DOMAIN_H__
21 #include <speckley/Speckley.h>
22 #include <speckley/SpeckleyException.h>
23 #include <speckley/AbstractAssembler.h>
24 #include <speckley/domainhelpers.h>
26 #include <escript/AbstractContinuousDomain.h>
27 #include <escript/Data.h>
28 #include <escript/FunctionSpace.h>
29 #include <escript/SubWorld.h>
31 #include <boost/python/tuple.hpp>
32 #include <boost/python/list.hpp>
45 typedef std::map<std::string, int>
simap_t;
52 struct ReaderParameters
55 std::vector<dim_t>
first;
110 virtual int getMPISize()
const {
return m_mpiInfo->size; }
116 virtual int getMPIRank()
const {
return m_mpiInfo->rank; }
122 virtual void MPIBarrier()
const {
124 MPI_Barrier(m_mpiInfo->comm);
132 virtual bool onMasterProcessor()
const {
return getMPIRank()==0; }
138 MPI_Comm getMPIComm()
const {
return m_mpiInfo->comm; }
145 virtual bool isValidFunctionSpaceType(
int fsType)
const;
151 virtual std::string functionSpaceTypeAsString(
int fsType)
const;
157 virtual int getDim()
const {
return m_numDim; }
168 return !(operator==(other));
177 virtual std::pair<int,dim_t> getDataShape(
int fsType)
const;
185 int getTagFromSampleNo(
int fsType,
dim_t sampleNo)
const;
193 virtual void setTagMap(
const std::string& name,
int tag) {
194 m_tagMap[name] = tag;
202 virtual int getTag(
const std::string& name)
const {
203 if (m_tagMap.find(name) != m_tagMap.end()) {
204 return m_tagMap.find(name)->second;
206 throw SpeckleyException(
"getTag: invalid tag name");
215 virtual bool isValidTagName(
const std::string& name)
const {
216 return (m_tagMap.find(name)!=m_tagMap.end());
223 virtual std::string showTagNames()
const;
245 virtual bool probeInterpolationOnDomain(
int fsType_source,
246 int fsType_target)
const;
255 virtual signed char preferredInterpolationOnDomain(
int fsType_source,
256 int fsType_target)
const;
265 commonFunctionSpace(
const std::vector<int>& fs,
int& resultcode)
const;
288 #ifdef ESYS_HAVE_BOOST_NUMPY
293 virtual boost::python::numpy::ndarray getNumpyX()
const;
298 virtual boost::python::numpy::ndarray getConnectivityInfo()
const;
333 virtual void setTags(
int fsType,
int newTag,
const escript::Data& mask)
const;
340 virtual bool isCellOriented(
int fsType)
const;
348 virtual StatusType getStatus()
const {
return m_status; }
354 virtual int getNumberOfTagsInUse(
int fsType)
const;
360 virtual const int* borrowListOfTagsInUse(
int fsType)
const;
366 virtual bool canTag(
int fsType)
const;
372 virtual int getApproximationOrder(
int fsType)
const {
return 1; }
378 virtual bool supportsContactElements()
const {
return false; }
384 virtual int getContinuousFunctionCode()
const {
return Nodes; }
390 virtual int getReducedContinuousFunctionCode()
const {
391 throw SpeckleyException(
"Speckley does not support reduced functionspaces");
398 virtual int getFunctionCode()
const {
return Elements; }
404 virtual int getReducedFunctionCode()
const {
412 virtual int getFunctionOnBoundaryCode()
const {
421 virtual int getReducedFunctionOnBoundaryCode()
const {
429 virtual int getFunctionOnContactZeroCode()
const {
430 throw SpeckleyException(
"Speckley does not support contact elements");
437 virtual int getReducedFunctionOnContactZeroCode()
const {
438 throw SpeckleyException(
"Speckley does not support contact elements");
445 virtual int getFunctionOnContactOneCode()
const {
446 throw SpeckleyException(
"Speckley does not support contact elements");
453 virtual int getReducedFunctionOnContactOneCode()
const {
454 throw SpeckleyException(
"Speckley does not support contact elements");
461 virtual int getSolutionCode()
const {
469 virtual int getReducedSolutionCode()
const {
470 throw SpeckleyException(
"Speckley does not support reduced function spaces");
477 virtual int getDiracDeltaFunctionsCode()
const {
return Points; }
487 virtual int getSystemMatrixTypeId(
const boost::python::object& options)
const;
498 virtual int getTransportTypeId(
int solver,
int preconditioner,
int package,
499 bool symmetry)
const;
506 virtual void setToIntegrals(std::vector<real_t>& integrals,
508 virtual void setToIntegrals(std::vector<cplx_t>& integrals,
519 Assembler_ptr assembler)
const;
527 Assembler_ptr assembler)
const;
535 Assembler_ptr assembler)
const;
542 const boost::python::list& data,
543 Assembler_ptr assembler)
const;
552 Assembler_ptr assembler)
const;
557 void addPDEToTransportProblemFromPython(
560 Assembler_ptr assembler)
const;
568 int column_blocksize,
584 virtual void Print_Mesh_Info(
bool full=
false)
const;
594 virtual void write(
const std::string& filename)
const = 0;
600 virtual std::string getDescription()
const = 0;
607 void dump(
const std::string& filename)
const = 0;
614 const index_t* borrowSampleReferenceIDs(
int fsType)
const = 0;
636 std::string varname,
const ReaderParameters& params)
const = 0;
643 const ReaderParameters& params)
const = 0;
650 std::string filename,
const ReaderParameters& params)
const = 0;
656 virtual void writeBinaryGrid(
const escript::Data& in, std::string filename,
657 int byteOrder,
int dataType)
const = 0;
663 virtual bool ownSample(
int fsType,
index_t id)
const = 0;
669 virtual dim_t getNumDataPointsGlobal()
const = 0;
675 virtual const dim_t* getNumNodesPerDim()
const = 0;
681 virtual const dim_t* getNumElementsPerDim()
const = 0;
688 virtual const dim_t* getNumFacesPerBoundary()
const = 0;
694 virtual IndexVector getNodeDistribution()
const = 0;
700 virtual const int* getNumSubdivisionsPerDim()
const = 0;
706 virtual double getLocalCoordinate(
dim_t index,
int dim)
const = 0;
712 virtual boost::python::tuple getGridParameters()
const = 0;
719 virtual bool supportsFilter(
const boost::python::tuple& t)
const;
724 virtual Assembler_ptr createAssembler(
const std::string type,
725 const DataMap& options)
const {
726 throw SpeckleyException(
"Domain does not support custom assemblers");
729 Assembler_ptr createAssemblerFromPython(
const std::string type,
730 const boost::python::list& options)
const;
736 virtual const double *getLength()
const = 0;
742 inline int getOrder()
const {
return m_order;}
749 mutable std::vector<int> m_nodeTags, m_nodeTagsInUse;
750 mutable std::vector<int> m_elementTags, m_elementTagsInUse;
751 std::vector<DiracPoint> m_diracPoints;
758 template<
typename Scalar>
762 void updateTagsInUse(
int fsType)
const;
768 void addPoints(
const std::vector<double>& coords,
769 const std::vector<int>& tags);
772 template<
typename Scalar>
778 virtual dim_t getNumNodes()
const = 0;
781 virtual dim_t getNumElements()
const = 0;
784 virtual dim_t getNumDOF()
const = 0;
787 virtual void assembleCoordinates(
escript::Data& arg)
const = 0;
794 virtual void assembleIntegrate(std::vector<real_t>& integrals,
796 virtual void assembleIntegrate(std::vector<cplx_t>& integrals,
802 bool reduced)
const = 0;
808 virtual dim_t getDofOfNode(
dim_t node)
const = 0;
814 virtual void balanceNeighbours(
escript::Data& data,
bool average)
const = 0;
821 const DataMap& coefs, Assembler_ptr assembler)
const;
827 Assembler_ptr assembler)
const;
831 Assembler_ptr assembler)
const;
835 Assembler_ptr assembler)
const;
838 Assembler_ptr assembler)
const;
840 template<
typename Scalar>
841 void setToIntegralsWorker(std::vector<Scalar>& integrals,
845 virtual dim_t findNode(
const double *coords)
const = 0;
850 #endif // __Speckley_DOMAIN_H__
@ DATATYPE_INT32
Definition: speckley/src/system_dep.h:61
std::map< std::string, int > simap_t
Definition: speckley/src/SpeckleyDomain.h:59
std::map< std::string, int > TagMap
Definition: Speckley.h:63
virtual bool initFromFile(const std::string &filename)
Reads the domain from a dump file.
Definition: weipa/src/SpeckleyDomain.cpp:69
int getNumDataPointsPerSample() const
Return the number of data points per sample.
Definition: Data.h:544
bool isNotEmpty(const std::string target, const DataMap &mapping)
Definition: ripley/src/domainhelpers.h:54
bool isComplex() const
True if components of this data are stored as complex.
Definition: Data.cpp:1160
escript::Data readNcGrid(std::string filename, std::string varname, escript::FunctionSpace fs, const object &pyShape, double fill, const object &pyFirst, const object &pyNum, const object &pyMultiplier, const object &pyReverse)
Definition: speckleycpp.cpp:115
escript::Data getSize() const
Returns the sample size (e.g. the diameter of elements, radius of particles).
Definition: FunctionSpace.cpp:295
virtual std::string showTagNames() const
returns all tag names in a single string separated by commas
Definition: speckley/src/SpeckleyDomain.cpp:152
@ Points
Definition: Dudley.h:72
std::map< std::string, escript::Data > DataMap
Definition: ripley/src/domainhelpers.h:39
std::vector< real_t > DoubleVector
Definition: Speckley.h:62
#define REGISTER_ESCRIPT_EXCEPTION_TRANSLATORS
Definition: ExceptionTranslators.h:26
assembler_t
Definition: speckley/src/SpeckleyDomain.h:50
virtual std::string getDescription() const =0
returns a description for this domain
void requireWrite()
Ensures data is ready for write access. This means that the data will be resolved if lazy and will be...
Definition: Data.cpp:1239
Represents a full Speckley domain including nodes and elements.
Definition: weipa/src/SpeckleyDomain.h:50
virtual Centering getCenteringForFunctionSpace(int fsCode) const
Returns whether data on given function space is node or cell centered.
Definition: weipa/src/SpeckleyDomain.cpp:75
virtual escript::Data getNormal() const
returns boundary normals at the quadrature point on the face elements
Definition: speckley/src/SpeckleyDomain.cpp:454
@ Nodes
Definition: Dudley.h:67
@ DATATYPE_FLOAT64
Definition: speckley/src/system_dep.h:63
#define INDEX2(_X1_, _X2_, _N1_)
Definition: index.h:23
virtual void addToRHSFromPython(escript::Data &rhs, const boost::python::list &data, Assembler_ptr assembler) const
a wrapper for addToRHS that allows calling from Python
Definition: speckley/src/SpeckleyDomain.cpp:765
const DataTypes::real_t * getSampleDataRO(DataTypes::RealVectorType::size_type sampleNo, DataTypes::real_t dummy=0) const
Return the sample data for the given sample no. Please do not use this unless you NEED to access samp...
Definition: Data.h:1989
escript::Domain_ptr _rectangle(int order, double _n0, double _n1, const object &l0, const object &l1, int d0, int d1, const object &objpoints, const object &objtags, escript::SubWorld_ptr world)
Definition: speckleycpp.cpp:235
bool initialized
Definition: VisItControl.cpp:66
FunctionSpace continuousFunction(const AbstractDomain &domain)
Create function space objects.
Definition: FunctionSpaceFactory.cpp:45
std::string siloPath
Definition: weipa/src/SpeckleyDomain.h:94
const DataTypes::ShapeType & getDataPointShape() const
Return a reference to the data point shape.
Definition: Data.h:705
virtual bool onMasterProcessor() const
returns true if on MPI processor 0, else false
Definition: speckley/src/SpeckleyDomain.h:146
Assembler_ptr createAssemblerFromPython(const std::string type, const boost::python::list &options) const
Definition: speckley/src/SpeckleyDomain.cpp:757
void dump(const std::string &filename) const =0
dumps the mesh to a file with the given name
int getOrder() const
returns the order of the domain
Definition: speckley/src/SpeckleyDomain.h:756
std::vector< int > m_nodeTags
Definition: speckley/src/SpeckleyDomain.h:763
int byteOrder
byte order in the file (used by binary reader only)
Definition: speckley/src/SpeckleyDomain.h:78
escript::Data readBinaryGridFromZipped(std::string filename, escript::FunctionSpace fs, const object &pyShape, double fill, int byteOrder, int dataType, const object &pyFirst, const object &pyNum, const object &pyMultiplier, const object &pyReverse)
Definition: speckleycpp.cpp:86
SpeckleyDomain(dim_t dim, int order, escript::SubWorld_ptr p=escript::SubWorld_ptr())
Constructor with number of dimensions. Allocates MPI info structure.
Definition: speckley/src/SpeckleyDomain.cpp:65
virtual NodeData_ptr getMeshByName(const std::string &name) const
Returns the node mesh with given name.
Definition: weipa/src/SpeckleyDomain.cpp:200
boost::shared_ptr< SpeckleyNodes > SpeckleyNodes_ptr
Definition: SpeckleyNodes.h:31
boost::shared_ptr< AbstractDomain > Domain_ptr
Definition: AbstractDomain.h:55
Give a short description of what AbstractTransportProblem does.
Definition: AbstractTransportProblem.h:58
@ ReducedNodes
Definition: Finley.h:83
@ DegreesOfFreedom
Definition: Dudley.h:66
virtual void Print_Mesh_Info(bool full=false) const
writes information about the mesh to standard output
Definition: speckley/src/SpeckleyDomain.cpp:706
int getDataPointSize() const
Return the size of the data point. It is the product of the data point shape dimensions.
Definition: Data.cpp:1360
virtual bool writeToSilo(DBfile *dbfile, const std::string &pathInSilo, const StringVec &labels, const StringVec &units, bool writeMeshData)
Writes the domain to a Silo file.
Definition: weipa/src/SpeckleyDomain.cpp:222
std::vector< dim_t > first
the (global) offset into the data object to start writing into
Definition: speckley/src/SpeckleyDomain.h:69
virtual escript::ASM_ptr newSystemMatrix(int row_blocksize, const escript::FunctionSpace &row_functionspace, int column_blocksize, const escript::FunctionSpace &column_functionspace, int type) const
creates a stiffness matrix and initializes it with zeros
Definition: speckley/src/SpeckleyDomain.cpp:733
virtual boost::python::tuple getGridParameters() const =0
returns the tuple (origin, spacing, number_of_elements)
const escript::Data unpackData(const std::string target, const DataMap &mapping)
Definition: ripley/src/domainhelpers.h:43
virtual StringVec getMeshNames() const
Returns the names of all meshes within this domain.
Definition: weipa/src/SpeckleyDomain.cpp:126
Definition: FunctionSpace.h:49
JMPI makeInfo(MPI_Comm comm, bool owncom)
Definition: EsysMPI.cpp:43
SpeckleyElements_ptr faces
Definition: weipa/src/SpeckleyDomain.h:93
const FunctionSpace & getFunctionSpace() const
Return the function space.
Definition: Data.h:463
void complicate()
Definition: Data.cpp:6057
@ Elements
Definition: Dudley.h:68
boost::shared_ptr< DataVar > DataVar_ptr
Definition: weipa.h:65
Definition: DataVar.cpp:51
bool probeInterpolationAcross(int fsType_source, const escript::AbstractDomain &domain, int fsType_target, int dim)
Definition: CrossDomainCoupler.cpp:32
const_Domain_ptr getDomain() const
Returns the function space domain.
Definition: FunctionSpace.cpp:103
#define MPI_INT
Definition: EsysMPI.h:46
@ BYTEORDER_NATIVE
Definition: speckley/src/system_dep.h:48
Definition: AbstractAssembler.cpp:19
@ ZONE_CENTERED
Definition: DomainChunk.h:33
int getNumSamples() const
Return the number of samples.
Definition: Data.h:533
void copy(dim_t N, double *out, const double *in)
out = in
Definition: PasoUtil.h:116
virtual void setTagMap(const std::string &name, int tag)
sets a map from a clear tag name to a tag key
Definition: speckley/src/SpeckleyDomain.h:207
escript::Data readBinaryGrid(std::string filename, escript::FunctionSpace fs, const object &pyShape, double fill, int byteOrder, int dataType, const object &pyFirst, const object &pyNum, const object &pyMultiplier, const object &pyReverse)
Definition: speckleycpp.cpp:61
virtual bool initFromEscript(const escript::AbstractDomain *domain)
Initialises the domain using an escript domain instance.
Definition: weipa/src/SpeckleyDomain.cpp:50
#define MPI_COMM_WORLD
Definition: EsysMPI.h:48
Data represents a collection of datapoints.
Definition: Data.h:64
std::vector< int > m_elementTags
Definition: speckley/src/SpeckleyDomain.h:764
double l2(dim_t n, const double *x, escript::JMPI mpiinfo)
returns the global L2 norm of x
Definition: PasoUtil.cpp:530
virtual DataVar_ptr getDataVarByName(const std::string &name) const
Creates and returns a variable with domain data.
Definition: weipa/src/SpeckleyDomain.cpp:157
escript::Data getX() const
Returns the spatial locations of the data points.
Definition: FunctionSpace.cpp:229
index_t dim_t
Definition: DataTypes.h:93
void tupleListToMap(DataMap &mapping, const bp::list &list)
Definition: speckley/src/SpeckleyDomain.cpp:50
std::vector< int > reverse
if non-zero, values are written from last index to first index
Definition: speckley/src/SpeckleyDomain.h:76
boost::shared_ptr< JMPI_ > JMPI
Definition: EsysMPI.h:72
virtual void readBinaryGridFromZipped(escript::Data &out, std::string filename, const ReaderParameters ¶ms) const =0
reads grid data from a compressed raw binary file into a Data object
@ ReducedDegreesOfFreedom
Definition: Finley.h:81
boost::shared_ptr< AbstractTransportProblem > ATP_ptr
Definition: AbstractTransportProblem.h:175
Base class for escript system matrices.
Definition: AbstractSystemMatrix.h:57
Stores and manipulates one type of speckley mesh elements (cells, faces).
Definition: SpeckleyElements.h:45
@ DATATYPE_FLOAT32
Definition: speckley/src/system_dep.h:62
virtual escript::Data getX() const
returns locations in the SEM nodes
Definition: speckley/src/SpeckleyDomain.cpp:437
DataTypes::real_t * getSampleDataRW(DataTypes::RealVectorType::size_type sampleNo, DataTypes::real_t dummy=0)
Return the sample data for the given sample no. Please do not use this unless you NEED to access samp...
Definition: Data.h:1954
bool isComplexCoef(const std::string target, const DataMap &mapping)
returns trure if the target data object is complex
Definition: speckley/src/domainhelpers.h:61
virtual int getMPISize() const
returns the number of processors used for this domain
Definition: speckley/src/SpeckleyDomain.h:124
boost::shared_ptr< ElementData > ElementData_ptr
Definition: weipa.h:67
Brick is the 3-dimensional implementation of a SpeckleyDomain.
Definition: speckley/src/Brick.h:47
virtual void reorderGhostZones(int ownIndex)
Reorders elements so that 'ghost' elements (i.e. those that do not belong to ownIndex) appear last.
Definition: weipa/src/SpeckleyDomain.cpp:212
virtual void writeBinaryGrid(const escript::Data &in, std::string filename, int byteOrder, int dataType) const =0
writes a Data object to a file in raw binary format
@ NODE_CENTERED
Definition: DomainChunk.h:32
SpeckleyDomain extends the AbstractContinuousDomain interface for the Speckley library and is the bas...
Definition: speckley/src/SpeckleyDomain.h:99
@ ReducedElements
Definition: Speckley.h:81
virtual void MPIBarrier() const
if compiled for MPI then executes an MPI_Barrier, else does nothing
Definition: speckley/src/SpeckleyDomain.h:136
bool isEmpty() const
Definition: Data.cpp:1132
std::vector< real_t > DoubleVector
Definition: Ripley.h:62
bool initialized
Definition: weipa/src/SpeckleyDomain.h:90
@ FaceElements
Definition: Speckley.h:82
virtual bool isValidTagName(const std::string &name) const
returns true if name is a defined tag name
Definition: speckley/src/SpeckleyDomain.h:229
TagMap m_tagMap
Definition: speckley/src/SpeckleyDomain.h:762
boost::shared_ptr< SpeckleyElements > SpeckleyElements_ptr
Definition: SpeckleyElements.h:33
Rectangle is the 2-dimensional implementation of a SpeckleyDomain.
Definition: speckley/src/Rectangle.h:47
virtual int getTag(const std::string &name) const
returns the tag key for tag name
Definition: speckley/src/SpeckleyDomain.h:216
@ DegreesOfFreedom
Definition: Speckley.h:76
@ ReducedElements
Definition: Dudley.h:69
@ Elements
Definition: Speckley.h:80
virtual ElementData_ptr getElementsForFunctionSpace(int fsCode) const
Returns the element data for given function space code.
Definition: weipa/src/SpeckleyDomain.cpp:97
virtual StringVec getVarNames() const
Returns the names of all 'special' domain variables.
Definition: weipa/src/SpeckleyDomain.cpp:142
@ ReducedNodes
Definition: Speckley.h:79
boost::shared_ptr< SubWorld > SubWorld_ptr
Definition: SubWorld.h:161
virtual std::pair< int, dim_t > getDataShape(int fsType) const
returns the number of data points per sample, and the number of samples as a pair.
Definition: speckley/src/SpeckleyDomain.cpp:126
#define MPI_MIN
Definition: EsysMPI.h:53
SpeckleyElements_ptr cells
Definition: weipa/src/SpeckleyDomain.h:92
@ BYTEORDER_LITTLE_ENDIAN
Definition: speckley/src/system_dep.h:56
virtual ElementData_ptr getElementsByName(const std::string &name) const
Returns element data with given name.
Definition: weipa/src/SpeckleyDomain.cpp:189
SpeckleyNodes_ptr nodes
Definition: weipa/src/SpeckleyDomain.h:91
@ BYTEORDER_BIG_ENDIAN
Definition: speckley/src/system_dep.h:57
int dataType
data type in the file (used by binary reader only)
Definition: speckley/src/SpeckleyDomain.h:80
BOOST_PYTHON_MODULE(speckleycpp)
Definition: speckleycpp.cpp:319
@ FaceElements
Definition: Dudley.h:70
void RuntimeErrorTranslator(const EsysException &e)
Function which translates an EsysException into a python RuntimeError.
Definition: ExceptionTranslators.cpp:51
virtual void removeGhostZones(int ownIndex)
Removes 'ghost' elements and nodes.
Definition: weipa/src/SpeckleyDomain.cpp:217
int index_t
type for array/matrix indices used both globally and on each rank
Definition: DataTypes.h:88
bool isExpanded() const
Return true if this Data is expanded.
Definition: Data.cpp:1111
std::vector< int > multiplier
Definition: speckley/src/SpeckleyDomain.h:74
@ ReducedFaceElements
Definition: Dudley.h:71
virtual void readBinaryGrid(escript::Data &out, std::string filename, const ReaderParameters ¶ms) const =0
reads grid data from a raw binary file into a Data object
boost::shared_ptr< NodeData > NodeData_ptr
Definition: weipa.h:69
std::vector< std::string > StringVec
Definition: weipa.h:61
int getTypeCode() const
Returns the function space type code.
Definition: FunctionSpace.cpp:95
@ DEFAULT_ASSEMBLER
Definition: speckley/src/SpeckleyDomain.h:65
int getDim() const
Return the number of spatial dimensions of the underlying domain.
Definition: FunctionSpace.h:197
virtual int getMPIRank() const
returns the MPI rank of this processor
Definition: speckley/src/SpeckleyDomain.h:130
FunctionSpace function(const AbstractDomain &domain)
Return a function FunctionSpace.
Definition: FunctionSpaceFactory.cpp:57
virtual NodeData_ptr getNodes() const
Returns a pointer to the full nodes.
Definition: weipa/src/SpeckleyDomain.h:85
dim_t node
Definition: speckley/src/SpeckleyDomain.h:89
Data Vector(double value, const FunctionSpace &what, bool expanded)
Return a Data object containing vector data-points. ie: rank 1 data-points.
Definition: DataFactory.cpp:139
Structure that wraps parameters for the grid reading routines.
Definition: speckley/src/SpeckleyDomain.h:66
virtual int getDim() const
returns the number of spatial dimensions of the domain
Definition: speckley/src/SpeckleyDomain.h:171
SpeckleyDomain()
Definition: weipa/src/SpeckleyDomain.cpp:36
@ Points
Definition: Speckley.h:84
int MPI_Comm
Definition: EsysMPI.h:42
bool actsExpanded() const
Return true if this Data is expanded or resolves to expanded. That is, if it has a separate value for...
Definition: Data.cpp:1118
Base class for all escript domains.
Definition: AbstractDomain.h:64
std::vector< index_t > IndexVector
Definition: Speckley.h:61
std::vector< dim_t > numValues
the number of values to read from file
Definition: speckley/src/SpeckleyDomain.h:71
#define Speckley_DLL_API
Definition: speckley/src/system_dep.h:23
virtual dim_t getNumDataPointsGlobal() const =0
returns the number of data points summed across all MPI processes
boost::shared_ptr< AbstractSystemMatrix > ASM_ptr
Definition: AbstractSystemMatrix.h:47
std::complex< real_t > cplx_t
complex data type
Definition: DataTypes.h:82
A struct to contain a dirac point's information.
Definition: speckley/src/SpeckleyDomain.h:87
Centering
Definition: DomainChunk.h:31
int getRowBlockSize() const
returns the row block size
Definition: AbstractSystemMatrix.h:128
Data Scalar(double value, const FunctionSpace &what, bool expanded)
A collection of factory functions for creating Data objects which contain data points of various shap...
Definition: DataFactory.cpp:63
virtual escript::Data getSize() const
returns the element size
Definition: speckley/src/SpeckleyDomain.cpp:459
virtual void readNcGrid(escript::Data &out, std::string filename, std::string varname, const ReaderParameters ¶ms) const =0
reads grid data from a netCDF file into a Data object
std::map< std::string, escript::Data > DataMap
Definition: speckley/src/domainhelpers.h:39
void expand()
Whatever the current Data type make this into a DataExpanded.
Definition: Data.cpp:1180
int getColumnBlockSize() const
returns the column block size
Definition: AbstractSystemMatrix.h:139
std::vector< int > IntVec
Definition: weipa.h:60
virtual NodeData_ptr getMeshForFunctionSpace(int fsCode) const
Returns the node mesh for given function space code.
Definition: weipa/src/SpeckleyDomain.cpp:81
virtual int getSystemMatrixTypeId(const boost::python::object &options) const
returns the identifier of the matrix type to be used for the global stiffness matrix when a particula...
Definition: speckley/src/SpeckleyDomain.cpp:722
An exception class that signals an invalid argument value.
Definition: EsysException.h:103
int tag
Definition: speckley/src/SpeckleyDomain.h:90
A class that provides functionality to read an escript data object from a dump file or an escript::Da...
Definition: DataVar.h:36
AbstractContinuousDomain, base class for continuous domains.
Definition: AbstractContinuousDomain.h:60
SpeckleyException exception class.
Definition: SpeckleyException.h:44
escript::Domain_ptr _brick(int order, double _n0, double _n1, double _n2, const object &l0, const object &l1, const object &l2, int d0, int d1, int d2, const object &objpoints, const object &objtags, escript::SubWorld_ptr world)
Definition: speckleycpp.cpp:143
std::vector< index_t > IndexVector
Definition: DataTypes.h:91
Stores and manipulates speckley mesh nodes.
Definition: SpeckleyNodes.h:39
virtual void addPDEToTransportProblem(AbstractTransportProblem &tp, escript::Data &source, const escript::Data &M, const escript::Data &A, const escript::Data &B, const escript::Data &C, const escript::Data &D, const escript::Data &X, const escript::Data &Y, const escript::Data &d, const escript::Data &y, const escript::Data &d_contact, const escript::Data &y_contact, const escript::Data &d_dirac, const escript::Data &y_dirac) const
adds a PDE onto a transport problem
Definition: AbstractContinuousDomain.cpp:166
virtual void addToSystemFromPython(escript::AbstractSystemMatrix &mat, escript::Data &rhs, const boost::python::list &data, Assembler_ptr assembler) const
a wrapper for addToSystem that allows calling from Python
Definition: speckley/src/SpeckleyDomain.cpp:747
@ Nodes
Definition: Speckley.h:78
std::vector< T > extractPyArray(const object &obj, const std::string &name, int expectedLength=0)
Definition: speckleycpp.cpp:36